species:   Clros
pid:       PID2216
parent:    cro-mir-36
paralog:   b
locus:     CADEHS020000106.2:298126-298214
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000106.2:298126-298214

350 out of bounds
571 alignments
219 proper strand
209 stranded perfect matches

*******************                                                ********************* 
UCAAACACAAUUAGCGGUCUAUACCCAACUUUUCCAAAAAUUUUCCAGAGUGGAAGGUUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((.(((((((..............))))))).))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=122 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 c*
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=122 ma
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 ma*

-----------------------------------------------------------------------GCUAAUUGUGUUUGAGA- l=17 a=1 
--------------------------------------------------------------------ACCGCUAAUUGUGUUUGAGAc l=21 a=1 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGAc l=22 a=2 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUU----- l=19 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUG---- l=20 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGA--- l=21 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAG-- l=22 a=2 
---------------------------------------------------------------UAUAGACCGCUAAUUGUGUUUa---- l=22 a=1 
----------------------------------------------------------UUGGGUAUAGACCGCUAAa------------ l=19 a=1 
----------------------------------------------------GAAGGUUUGGGU------------------------- l=12 a=1 
----------------------------------------------AGAGUGGAAGGUUUGGGUAUA---------------------- l=21 a=1 
-----CACAAUUAGCGGUCUAUACCCAACUUUUCCAAAAAUUUUCCAGAGUGGAAG--------------------------------- l=51 a=1 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=122 (c,ma)
UCAAACACAAUUAGCGGUg---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=67 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=11 
UCAAACACAAUUAGCGGUCaA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCUc-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCUAc------------------------------------------------------------------- l=22 a=2 

mb-01011
ax-1011001
ku-11
ss-101010011110
fn-101
